Publications

Journal articles

  • Effects of low dose ionizing radiation on DNA damage-caused pathways by reverse-phase protein array and Bayesian networks
    Kim, Dong-Chul and Kang, Mingon and Biswas, Ashis and Yang, Chin-Rang and Wang, Xiaoyu and Gao, Jean X
    In Journal of Bioinformatics and Computational Biology (JBCB), vol.15, no.02, pp-1750006, 2017.
    [ DOI ] [ Bibtex ]

  • PR2S2Clust: patched RNA-seq read segments’ structure-oriented clustering
    Biswas, Ashis Kumer and Gao, Jean X
    In Journal of Bioinformatics and Computational Biology (JBCB), vol.14, no.05, pp-1650027, 2016.
    [ DOI ] [ Bibtex ]

  • Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to psychiatric disorders
    Kim, Dongchul and Kang, Mingon and Biswas, Ashis and Liu, Chunyu and Gao, Jean
    In BMC medical genomics, vol.9, no.2, pp-50, 2016
    [ DOI ] [ Bibtex ]

  • Multi-Block Bipartite Graph for Multimodal Genomic Data
    Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu and Jean X. Gao
    In IEEE/ACM Transactions on Computational Biology and Bioinformatics (IEEE TCBB), 2016.
    [ DOI ] [ Bibtex ]

  • Inferring disease associations of the long non-coding RNAs through non-negative matrix factorization
    Biswas, Ashis Kumer and Kang, Mingon and Kim, Dong-Chul and Ding, Chris HQ and Zhang, Baoju and Wu, Xiaoyong and Gao, Jean X
    In Network Modeling Analysis in Health Informatics and Bioinformatics, vol.4, no.1, pp.9, 2015
    [ DOI ] [ Bibtex ]

  • CNCTDiscriminator: coding and noncoding transcript discriminator—an excursion through hypothesis learning and ensemble learning approaches
    Biswas, Ashis Kumer and Zhang, Baoju and Wu, Xiaoyong and Gao, Jean X
    In Journal of bioinformatics and computational biology (JBCB), vol.11, no.05, pp.1342002, 2013
    [ DOI ] [ Bibtex ]

  • Design of a Reversible Parallel Loading Shift Register
    Ashis Kumer Biswas, Lafifa Jamal, M. A. Mottalib, Hafiz Md. Hasan Babu
    In Dhaka University Journal of Engineering & Technology. Vol. 1(2) 1-5, 2011.
    [ Bibtex ]

  • Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information
    Biswas, Ashis Kumer and Noman, Nasimul and Sikder, Abdur Rahman
    In BMB Bioinformatics, vol.11, no.1, pp.273, 2010.
    [ DOI ] [ Bibtex ]

  • Efficient approaches for designing reversible binary coded decimal adders
    Biswas, Ashis Kumer and Hasan, Md Mahmudul and Chowdhury, Ahsan Raja and Babu, Hafiz Md Hasan
    In Microelectronics journal, vol.39, no. 12, pp.1693–1703, 2008.
    [ DOI ] [ Bibtex ]

  • Optimization of Reliability in a Real Time Security System Controlled by Embedded Internet Technology
    Shah Mostafa Khaled , Rezaul Karim , Ashis Kumer Biswas, R.H. Rahman , Nusrat Nowsheen and Mohammad Abdul Qayum
    In Asian Journal of Information Technology, vol.6, no.10, pp.1050-1056, 2007.
    [ Bibtex ]

Conference articles

  • Robust Inductive Matrix Completion Strategy to Explore Associations between LincRNAs and Human Disease Phenotypes
    Ashis Kumer Biswas, Dongchul Kim, Mingon Kang, and Jean X. Gao
    In Proceedings of IEEE International Conference on Bioinformatics & Biomedicine, Shenzhen, China, Dec 15–18, 2016.
    Regular paper acceptance rate: 70/361 = 19.4%
    [ DOI ] [ Bibtex ]

  • An Integrative Genomic Study for Multimodal Genomic Data Using Multi-Block Bipartite Graph
    Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, and Jean Gao
    In Proceedings of IEEE International Conference on Bioinformatics & Biomedicine (IEEE BIBM 2015), Washington D.C., USA, Nov. 9–12, 2015.
    Regular paper acceptance rate: 68/346 = 19.6%
    [ DOI ] [ Bibtex ]

  • Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to Psychiatric disorders
    Dong-Chul Kim, Mingon Kang, Ashis Biswas, Chunyu Liu, and Jean Gao
    In Proceedings of IEEE International Conference on Bioinformatics & Biomedicine (IEEE BIBM 2015), Washington D.C., USA, Nov. 9-12, 2015.
    Regular paper acceptance rate: 68/346 = 19.6%
    [ DOI ] [ Bibtex ]

  • A Multi-label Classification Framework to Predict Disease Associations of Long non-coding RNAs (lncRNAs)
    Ashis Kumer Biswas, Baoju Zhang, Xiaoyong Wu and Jean X. Gao
    In Proceedings of The 3rd International Conference on Communications, Signal Processing, and Systems (CSPS) held in Hohhot, China, 14-15 July, 2014.
    [ DOI ] [ Bibtex ]

  • Improving Consensus Hierarchical Clustering Framework
    Ashis Kumer Biswas, Baoju Zhang, Xiaoyong Wu and Jean X. Gao
    In Proceedings of The 4th International Conference on Communications, Signal Processing and Systems (CSPS 2015), Chengdu, Sichuan, China, Oct 23-24, 2015.
    [ DOI ] [ Bibtex ]

  • NMF-based LncRNA-Disease Association Inference and Bi-clustering
    Ashis Kumer Biswas, Jean X Gao, Baoju Zhang and Xiaoyong Wu
    In Proceedings of The 14th IEEE International Conference on BioInformatics and BioEngineering (BIBE-2014), held in Boca Raton, Florida, USA, November 10-12, 2014.
    Best paper award
    [ DOI ] [ Bibtex ]

  • An Information Integration Approach for classifying coding and non-coding genomic data
    Ashis Kumer Biswas, Baoju Zhang, Xiaoyong Wu and Jean X. Gao
    In Proceedings of The International Conference on Communications Signal Processing and Systems, Sept 1-3, 2013, Tianjin, China.
    [ DOI ] [ Bibtex ]

  • QLZCClust: Quaternary Lempel-Ziv Complexity based Clustering of the RNA-seq Read Block Segments
    Ashis Kumer Biswas, Baoju Zhang, Xiaoyong Wu and Jean X. Gao
    In Proceedings of The 13th IEEE International Conference on Bioinformatics and Bioengineering (IEEE BIBE 2013) held in Chania, Greece, 10-13, November 2013.
    [ DOI ] [ Bibtex ]

  • Integrating RNA-seq transcript signals, Primary and Secondary Structure Information in Differentiating coding and non-coding RNA transcripts
    Ashis Kumer Biswas, Jean Gao, Xiaoyong Wu and Baoju Zhang
    In Proceedings of The 5th International Conference on Bioinformatics and Computational Biology (BICoB) 2013, Honolulu, Hawaii.
    [ Conference-Program ]

  • Infobox Suggestion for Wikipedia Entities
    Afroza Sultana, Quazi M. Hasan, Ashis Kumer Biswas, Soumyava Das, Habibur Rahman, Chris Ding and Chengkai Li
    In Proceedings of The 21st ACM international conference on Information and knowledge management (CIKM 2012); Pages 2307-2310.
    [ DOI ] [ Bibtex ]

  • Incorporating Evolutionary Information in Protein Phosphorylation Site Predictions
    Ashis Kumer Biswas, Abdur Rahman Sikder and Nasimul Noman
    In Proceedings of The 8th Asia Pacific Bioinformatics Conference (APBC 2010), held on 18-21 January 2010 in Bengalore, India.

  • A Novel Approach to Design BCD Adder and Carry Skip BCD Adder
    Ashis Kumer Biswas, Md. Mahmudul Hasan, Moshaddek Hasan, Ahsan Raja Chowdhury and Hafiz Md. Hasan Babu
    In Proceedings of The 21st International Conference on VLSI Design, 4-8 January 2008, pp: 566-571 (IEEE Computer Society 2008).
    [ DOI ] [ Bibtex ]

  • Present status of Telecommunication in Bangladesh and its impact on ICT
    Shah Mostafa Khaled, Ashis Kumer Biswas, Mohammad Abdul Qayuum and M Lutfar Rahman
    In Proceedings of The 9th International Conference on Computer and Information Technology (ICCIT), 2006, pp: 221-226

  • An Analysis on Human Resource Development in the ICT Sector of Bangladesh
    Shah Mostafa Khaled, Ashis Kumer Biswas, M. Lutfar Rahman, Suraiya Pervin
    In Proceedings of The 8th International Conference on Computer and Information Technology (ICCIT), 2005; pp:507-512.